Ph.d (Licentiate) Position in Bioinformatic at KTH/Science for Life Laboratory
5 dagen geleden | Closing on Jul 25
KTH Royal Institute of Technology
Ph.d (Licentiate) Position in Bioinformatic at KTH/Science for Life Laboratory
KTH Royal Institute of Technology
KTH in Stockholm is the largest and oldest technical university in Sweden. No less than one-third of Sweden’s technical research and engineering education capacity at university level is provided by KTH.
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DETAILS
Gepubliceerd: 5 dagen geleden
Sluitingsdatum: jul. 25
Locatie: Stockholm, Zweden
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DEZE VACATURE DELEN

Ph.d (Licentiate) Position in Bioinformatic at KTH/Science for Life Laboratory

KTH Royal Institute of Technology in Stockholm has grown to become one of Europe’s leading technical and engineering universities, as well as a key centre of intellectual talent and innovation. We are Sweden’s largest technical research and learning institution and home to students, researchers and faculty from around the world. Our research and education covers a wide area including natural sciences and all branches of engineering, as well as in architecture, industrial management, urban planning, history and philosophy.

The School of Biotechnology offers a curriculum that reflects the multidisciplinary nature of Biotechnology, integrating theoretical and applied science in undergraduate and graduate courses. The school has six departments with about 300 employees, located at AlbaNova University Center in Stockholm and Science for Life Laboratory in Solna. The Biotechnology research within the school is internationally well recognized.

A position as a graduate student (licentiate, 2 years) is available at Science for Life Laboratory (SciLifeLab) in Stockholm, a Swedish national resource center for life science research. We are looking for an enthusiastic graduate student to join the lab of Associate Professor Olof Emanuelsson, affiliated with the School of Biotechnology at the Royal Institute of Technology (KTH) in Stockholm

Job description

The work will consist of bioinformatics method development for massively parallel sequencing data ("next-generation sequencing" data), with particular focus on RNA-seq, including allele-specific expression (ASE) and transcriptome assembly. Methods development includes e.g. programming, statistical analysis, machine learning (e.g. deep neural networks), and visualization of results. You will also use your own and other methods to analyze transcriptome data from our collaborative projects with groups at Karolinska Institute (inflammatory processes in cardiovascular disease) and Swedish University of Agricultural Sciences, SLU (cone setting in spruce, and gene clustering in the model plant Arabidopsis). All projects are collaborations with experimental groups.

Note that this position as a graduate student is a licentiate positions. This means that you will be employed with the aim set on a licentiate degree, which normally is expected to be reached after 2 years. As a graduate student you will participate in research projects, attend relevant courses at graduate level, and follow the research field through e.g. literature and seminars. You will also have the possibility to participate in teaching, mainly as a teaching assistant at computer exercises, or to assume other departmental duties. The position could then be extended with up to another 6 months.

Qualifications

A suitable background for this position is a master's degree in computer science, mathematics, physics, bioinformatics, biotechnology, or related field. Experience from Unix (or Unix variant) and programming is a requirement, e.g. one or more of the following languages: Python, Perl, R, C, or Java. Knowledge about molecular biology is highly valued. The ability to work both independently and collaboratively is highly valued. Good command of written and spoken English is a requirement.

Trade union representatives

Contact information to trade union representatives can be found at KTH:s web page.

Application

Log into KTH's recruitment system in order to apply to this position. You are the main responsible to ensure that your application is complete according to the ad. Your complete application must be received at KTH no later than the last day of application.

The application should include the following documents:

(i) A letter stating your research interests and (if applicable) experiences

(ii) Curriculum vitae

(iii) Transcripts from university/university college

(iv) An example of commented source code you have written (a link to a repository is also ok). It is ok to provide source code written within projects, computer exercises, or assignments in courses.

Others

We firmly decline all contact with staffing and recruitment agencies and job ad salespersons.

Type of employment: Temporary position longer than 6 months
Contract type: Full time
First day of employment: According to agreement
Salary: Monthly salary according to KTH´s Ph.D. student salary agreement
Number of positions: 1
Working hours: 100%
City: Stockholm
County: Stockholms län
Country: Sweden
Reference number: B-2017-0459
Contact:
  1. Olof Emanuelsson, Associate Professor, E-mail: olofem@kth.se
Published: 2017-06-15
Last application date: 2017-07-25
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